Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ52486.1PspC domain protein. (63 aa)    
Predicted Functional Partners:
KMZ54942.1
Putative hybrid sensory kinase.
  
 
 0.859
KMZ55734.1
PAS domain protein.
   
 
 0.857
KMZ54975.1
Sensory box histidine kinase/response regulator.
   
 
 0.857
KMZ53555.1
Sensory box sensor histidine kinase/response regulator.
   
 
 0.857
KMZ52485.1
Hypothetical protein.
  
  
 0.768
KMZ52484.1
Integral membrane protein (putative).
       0.656
KMZ52483.1
Transcriptional regulator, PadR family.
       0.651
KMZ55394.1
Serine protease DO.
  
  
 0.638
KMZ52996.1
Putative serine protease HtrA.
  
  
 0.638
KMZ53028.1
Putative response regulator receiver domain protein.
  
 
 0.624
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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