Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KMZ52464.1Putative serine phosphatase RsbU, regulator of sigma subunit. (467 aa)    
Predicted Functional Partners:
KMZ55420.1
Putative sigma-E processing peptidase SpoIIGA.
  
  
 0.969
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
  
 0.890
KMZ53861.1
Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  
 0.876
KMZ54791.1
Stage II sporulation protein P.
  
   
 0.863
KMZ52467.1
Sporulation protein YabP.
 
     0.841
KMZ53046.1
Stage II sporulation protein R.
  
   
 0.840
KMZ54511.1
Stage II sporulation protein D.
 
   
 0.833
KMZ55423.1
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.832
KMZ55185.1
Stage V sporulation protein T.
 
   
 0.818
KMZ53195.1
Stage IV sporulation protein A.
  
   
 0.816
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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