Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMZ52466.1Spore cortex protein YabQ. (117 aa)    
Predicted Functional Partners:
KMZ52467.1
Sporulation protein YabP.
 
  
 0.984
KMZ52468.1
S4 RNA-binding domain protein.
  
    0.842
KMZ52471.1
Spore coat protein, CotS family.
 
     0.801
KMZ52465.1
Putative cell division protein FtsL.
 
    0.791
KMZ54403.1
Hypothetical protein.
  
     0.772
KMZ55020.1
Hypothetical protein.
  
     0.769
KMZ52464.1
Putative serine phosphatase RsbU, regulator of sigma subunit.
 
     0.759
KMZ52469.1
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.747
KMZ52811.1
Hypothetical protein.
  
     0.745
KMZ52443.1
Putative LysM domain protein.
  
     0.738
Your Current Organism:
Dorea sp. D27
NCBI taxonomy Id: 658665
Other names: D. sp. D27
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