Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBU47532.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
OBU43367.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0227 family.
  
     0.719
OBU47163.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
AYY26_08250
Histidine kinase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.619
OBU46869.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.576
OBU43369.1
Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
OBU45165.1
Urease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.544
OBU46870.1
Phosphoribosylglycinamide formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
OBU47519.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.490
lapA
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.484
OBU43435.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
Your Current Organism:
Photobacterium phosphoreum
NCBI taxonomy Id: 659
Other names: ATCC 11040, Acinetobacter phosphorescens, Bacillus hermesi, Bacillus phosphorescens II, Bacillus phosphoreus, Bacterium phosphorescens, Bacterium phosphoreum, CAIM 328, CIP 102511, Coccobacillus acropoma, DSM 15556, JCM 21184, LMG 4233, LMG:4233, Micrococcus phosphoreus, Micrococcus physiculus, NBRC 103031, P. phosphoreum, Photobacter phosphorescens, Photobacter phosphoreum, Photobacterium phosphorescens, Photobacterium profudum, Pseudomonas lucifera, Streptococcus phosphoreus
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