STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBU45280.1Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
OBU45279.1
Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
OBU45282.1
Urease accessory protein UreE; Involved in the assembly of the urease metallocenter; possible nickel donor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
OBU45283.1
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
OBU45284.1
Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.985
OBU45392.1
Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.979
hypB
Hydrogenase accessory protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.954
OBU47371.1
Hydrogenase accessory protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.954
OBU45281.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
AYY26_02485
Urea ABC transporter permease subunit UrtB; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.723
OBU45286.1
Urea ABC transporter permease subunit UrtC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.713
Your Current Organism:
Photobacterium phosphoreum
NCBI taxonomy Id: 659
Other names: ATCC 11040, Acinetobacter phosphorescens, Bacillus hermesi, Bacillus phosphorescens II, Bacillus phosphoreus, Bacterium phosphorescens, Bacterium phosphoreum, CAIM 328, CIP 102511, Coccobacillus acropoma, DSM 15556, JCM 21184, LMG 4233, LMG:4233, Micrococcus phosphoreus, Micrococcus physiculus, NBRC 103031, P. phosphoreum, Photobacter phosphorescens, Photobacter phosphoreum, Photobacterium phosphorescens, Photobacterium profudum, Pseudomonas lucifera, Streptococcus phosphoreus
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