Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OBU43295.1DMSO reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
dmsB
Dimethylsulfoxide reductase, chain B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.914
OBU43296.1
Dimethyl sulfoxide reductase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  0.887
OBU43298.1
Dimethylsulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.856
napF
Ferredoxin-type protein NapF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.828
OBU44985.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
torA
Trimethylamine N-oxide reductase I catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.553
torA-2
Nitrate reductase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  0.542
OBU41289.1
Trimethylamine N-oxide reductase I catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.533
OBU46871.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
AYY26_09430
tryptophan--tRNA ligase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.488
Your Current Organism:
Photobacterium phosphoreum
NCBI taxonomy Id: 659
Other names: ATCC 11040, Acinetobacter phosphorescens, Bacillus hermesi, Bacillus phosphorescens II, Bacillus phosphoreus, Bacterium phosphorescens, Bacterium phosphoreum, CAIM 328, CIP 102511, Coccobacillus acropoma, DSM 15556, JCM 21184, LMG 4233, LMG:4233, Micrococcus phosphoreus, Micrococcus physiculus, NBRC 103031, P. phosphoreum, Photobacter phosphorescens, Photobacter phosphoreum, Photobacterium phosphorescens, Photobacterium profudum, Pseudomonas lucifera, Streptococcus phosphoreus
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