Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD78700.1 | SDD78748.1 | SAMN04487996_102190 | SAMN04487996_102191 | Putative DNA-binding domain-containing protein. | DNA processing protein. | 0.790 |
SDD78748.1 | SDD78700.1 | SAMN04487996_102191 | SAMN04487996_102190 | DNA processing protein. | Putative DNA-binding domain-containing protein. | 0.790 |
SDD78748.1 | SDE63439.1 | SAMN04487996_102191 | SAMN04487996_10678 | DNA processing protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.604 |
SDD78748.1 | SDE63766.1 | SAMN04487996_102191 | SAMN04487996_10688 | DNA processing protein. | Putative endonuclease; Belongs to the UPF0102 family. | 0.603 |
SDD78748.1 | SDE64432.1 | SAMN04487996_102191 | SAMN04487996_106104 | DNA processing protein. | comF family protein. | 0.957 |
SDD78748.1 | SDE66343.1 | SAMN04487996_102191 | SAMN04487996_106149 | DNA processing protein. | Magnesium chelatase family protein. | 0.865 |
SDD78748.1 | SDF02576.1 | SAMN04487996_102191 | SAMN04487996_108230 | DNA processing protein. | Four helix bundle protein. | 0.688 |
SDD78748.1 | SDF22502.1 | SAMN04487996_102191 | SAMN04487996_109248 | DNA processing protein. | Four helix bundle protein. | 0.696 |
SDD78748.1 | SDF38034.1 | SAMN04487996_102191 | SAMN04487996_110155 | DNA processing protein. | Competence protein ComEC. | 0.916 |
SDD78748.1 | SDG38004.1 | SAMN04487996_102191 | SAMN04487996_11835 | DNA processing protein. | Exonuclease RecJ. | 0.696 |
SDD78748.1 | recA | SAMN04487996_102191 | SAMN04487996_105341 | DNA processing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.657 |
SDE63439.1 | SDD78748.1 | SAMN04487996_10678 | SAMN04487996_102191 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | DNA processing protein. | 0.604 |
SDE63439.1 | SDF38034.1 | SAMN04487996_10678 | SAMN04487996_110155 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Competence protein ComEC. | 0.418 |
SDE63439.1 | SDG38004.1 | SAMN04487996_10678 | SAMN04487996_11835 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Exonuclease RecJ. | 0.515 |
SDE63439.1 | recA | SAMN04487996_10678 | SAMN04487996_105341 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.979 |
SDE63766.1 | SDD78748.1 | SAMN04487996_10688 | SAMN04487996_102191 | Putative endonuclease; Belongs to the UPF0102 family. | DNA processing protein. | 0.603 |
SDE63766.1 | SDE64432.1 | SAMN04487996_10688 | SAMN04487996_106104 | Putative endonuclease; Belongs to the UPF0102 family. | comF family protein. | 0.760 |
SDE63766.1 | SDE66343.1 | SAMN04487996_10688 | SAMN04487996_106149 | Putative endonuclease; Belongs to the UPF0102 family. | Magnesium chelatase family protein. | 0.758 |
SDE63766.1 | SDF38034.1 | SAMN04487996_10688 | SAMN04487996_110155 | Putative endonuclease; Belongs to the UPF0102 family. | Competence protein ComEC. | 0.652 |
SDE64432.1 | SDD78748.1 | SAMN04487996_106104 | SAMN04487996_102191 | comF family protein. | DNA processing protein. | 0.957 |
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