STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE29580.1NHL repeat-containing protein. (447 aa)    
Predicted Functional Partners:
SDE29535.1
Por secretion system C-terminal sorting domain-containing protein.
    
  0.823
SDE29612.1
Hypothetical protein.
  
    0.774
SDE44953.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 
  0.749
tsaD
N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.686
SDH04940.1
Cytochrome c.
    
  0.658
SDD73467.1
Quinoprotein glucose dehydrogenase.
     
 0.652
SDF40474.1
Quinoprotein glucose dehydrogenase.
     
 0.652
SDF76058.1
Quinoprotein glucose dehydrogenase.
     
 0.652
SDG19939.1
Quinoprotein glucose dehydrogenase.
     
 0.652
SDG37260.1
Predicted dehydrogenase.
  
 
 0.633
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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