STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE21767.1Acyl-CoA hydrolase. (127 aa)    
Predicted Functional Partners:
SDE71044.1
3-hydroxyacyl-CoA dehydrogenase.
   
 0.908
SDD60221.1
Electron transfer flavoprotein alpha subunit apoprotein.
    
  0.652
SDD60255.1
Electron transfer flavoprotein beta subunit.
    
  0.621
SDF23336.1
Uncharacterized domain 1-containing protein.
     
 0.559
SDH01659.1
1,4-dihydroxy-2-naphthoyl-CoA hydrolase.
     
 0.559
SDF12820.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
   
 0.557
SDF22859.1
Enoyl-CoA hydratase/carnithine racemase.
   
 0.557
metE
Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
       0.530
SDE21726.1
GDSL-like Lipase/Acylhydrolase family.
       0.526
sucC
succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
     
 0.474
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.