STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE61493.1Predicted arabinose efflux permease, MFS family. (406 aa)    
Predicted Functional Partners:
SDF59573.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
  
     0.744
SDE72808.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
     
 0.496
SDG48754.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.496
SDG80160.1
Chorismate mutase.
   
 
 0.493
SDH42699.1
Major Facilitator Superfamily protein.
  
   
 0.492
SDG89441.1
Drug resistance transporter, EmrB/QacA subfamily.
  
     0.491
SDG50792.1
MFS transporter, DHA2 family, multidrug resistance protein; Belongs to the major facilitator superfamily.
  
     0.489
SDE21402.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.482
SDG22483.1
Predicted arabinose efflux permease, MFS family.
  
     0.466
SDE99235.1
HlyD family secretion protein.
  
  0.459
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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