STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE71905.1tRNA(fMet)-specific endonuclease VapC. (123 aa)    
Predicted Functional Partners:
SDE71940.1
Hypothetical protein.
       0.789
SDE71872.1
Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains.
 
     0.690
SDG77992.1
Predicted antitoxin, contains HTH domain.
  
     0.606
SDE71978.1
Protein of unknown function.
       0.581
vapC-2
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.565
SDG49178.1
Hypothetical protein.
   
 
 0.550
vapC
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.515
SDG12361.1
Putative transposase, YhgA-like.
  
     0.499
SDE71796.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
       0.497
SDE71833.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase).
       0.497
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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