STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF34279.1Carboxynorspermidine decarboxylase. (385 aa)    
Predicted Functional Partners:
SDE24916.1
Carboxynorspermidine dehydrogenase.
 
 
 0.922
SDD56073.1
Putative NADPH-quinone reductase (modulator of drug activity B).
    
  0.886
SDF56793.1
Putative NADPH-quinone reductase (modulator of drug activity B).
    
  0.886
SDH09273.1
Glutathione-regulated potassium-efflux system ancillary protein KefG.
    
  0.886
SDD49190.1
Modulator of drug activity B.
    
  0.879
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.877
SDG65170.1
Glycerol kinase; Belongs to the FGGY kinase family.
    
 0.877
SDH38795.1
Aspartate kinase.
  
 
 0.870
SDE10051.1
PDZ domain-containing protein.
     
 0.780
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
 0.760
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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