STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF61556.1Undecaprenyl-diphosphatase. (216 aa)    
Predicted Functional Partners:
SDD72688.1
Cytochrome P450.
   
  0.902
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.890
SDD61513.1
O-succinylbenzoic acid--CoA ligase.
    
  0.855
SDF87577.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.855
SDG84170.1
Long-chain acyl-CoA synthetase.
    
  0.855
SDG50128.1
Predicted naringenin-chalcone synthase.
  
 0.651
SDF32911.1
Glutamate or tyrosine decarboxylase.
    
 0.583
SDF21039.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.567
SDF00111.1
Diacylglycerol kinase (ATP).
 
  
 0.548
SDG51406.1
Glycerol-3-phosphate dehydrogenase.
    
 0.507
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.