STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG13236.1RNA polymerase sigma-70 factor, ECF subfamily. (221 aa)    
Predicted Functional Partners:
SDG13271.1
FecR family protein.
 
   0.877
SDE09174.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.735
SDF85776.1
FecR family protein.
  
   0.731
SDD52347.1
FecR family protein.
  
   0.730
SDE07694.1
FecR family protein.
  
   0.726
SDF89521.1
FecR family protein.
  
   0.725
SDE80085.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.724
SDF79284.1
FecR family protein.
  
   0.717
SDE09330.1
FecR family protein.
  
   0.716
SDG12391.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.716
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.