STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG19111.1Alginate export. (466 aa)    
Predicted Functional Partners:
SDG19070.1
Hypothetical protein.
 
     0.943
SDG19019.1
Nicotinamidase-related amidase.
 
     0.936
SDH40923.1
Hypothetical protein.
 
     0.739
SDG18971.1
Proline iminopeptidase.
       0.520
SDE85628.1
Nicotinamidase-related amidase.
 
     0.507
SDG19162.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.488
SDF41644.1
Hypothetical protein.
  
     0.477
SDD45662.1
Iron complex outermembrane recepter protein.
  
     0.419
SDF60272.1
Quinol monooxygenase YgiN.
  
     0.418
rplY
Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.418
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.