STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG50488.1Helix-turn-helix domain-containing protein. (273 aa)    
Predicted Functional Partners:
SDG50442.1
DNA-binding transcriptional regulator, MerR family.
 
  
 0.713
SDF20302.1
Septum formation initiator.
  
     0.652
SDH17597.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.613
SDE64634.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.610
SDG50349.1
Phytoene/squalene synthetase.
 
     0.604
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.543
SDG18141.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.541
SDG01458.1
CBS domain-containing protein.
  
     0.539
SDG50402.1
Phytoene desaturase.
       0.533
SDE73479.1
Hypothetical protein.
  
     0.502
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.