STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG56399.1Peptidase C39 family protein. (541 aa)    
Predicted Functional Partners:
SDG56443.1
UDP-glucoronosyl and UDP-glucosyl transferase.
 
     0.897
SDG56220.1
HlyD family secretion protein.
 
     0.841
SDG56255.1
ATP-binding cassette, subfamily B.
 
     0.827
SDE69454.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase.
    
  0.683
SDF87214.1
Starch-binding associating with outer membrane.
  
    0.632
SDD55945.1
Thiol:disulfide interchange protein DsbD.
  
 
 0.626
SDD55987.1
Disulphide bond corrector protein DsbC.
  
 
 0.626
SDF41138.1
Disulphide bond corrector protein DsbC.
  
 
 0.626
SDF99086.1
Thioredoxin-like.
  
 
 0.626
SDG42797.1
Thiol:disulfide interchange protein DsbD.
  
 
 0.626
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.