STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG97280.13',5'-cyclic-nucleotide phosphodiesterase. (324 aa)    
Predicted Functional Partners:
SDF36327.1
Adenylate cyclase, class 3.
    
  0.778
SDD76430.1
PAS domain S-box-containing protein.
  
  
  0.734
SDE80944.1
Predicted ATPase.
 
  
  0.550
SDG97235.1
Deoxyribodipyrimidine photolyase-related protein.
       0.524
SDE04295.1
PAS domain S-box-containing protein.
  
  
  0.522
SDG97189.1
Acetyltransferase (GNAT) family protein.
       0.517
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
  
  0.515
SDG98991.1
Protein of unknown function.
    
  0.504
SDH21916.1
PAS/PAC sensor signal transduction histidine kinase.
  
  
  0.479
SDD51384.1
3',5'-cyclic AMP phosphodiesterase CpdA.
     
 0.449
Your Current Organism:
Dyadobacter soli
NCBI taxonomy Id: 659014
Other names: D. soli, DSM 25329, Dyadobacter soli Lee et al. 2010, Dyadobacter sp. MJ20, JCM 16232, KCTC 22481, strain MJ20
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