Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KRG84591.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)    
Predicted Functional Partners:
KRG84031.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.891
KRG88234.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.857
KRG84592.1
Polyhydroxyalkanoic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.833
sucA
SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.812
KRG87302.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.809
KRG87536.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.782
KRG86768.1
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.773
KRG88015.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KRG84045.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
KRG83161.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
Your Current Organism:
Stenotrophomonas daejeonensis
NCBI taxonomy Id: 659018
Other names: JCM 16244, KCTC 22451, S. daejeonensis, Stenotrophomonas daejeonensis Lee et al. 2011, Stenotrophomonas sp. MJ03, strain MJ03
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