STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG82403.1TfoX domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)    
Predicted Functional Partners:
KRG82402.1
Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M17 family.
       0.773
KRG82401.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.671
KRG82400.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.564
KRG82397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.464
KRG82398.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.464
KRG82399.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.464
hisI
phosphoribosyl-ATP pyrophosphatase; Catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; In the N-terminal section; belongs to the PRA-CH family.
    
  0.437
Your Current Organism:
Stenotrophomonas daejeonensis
NCBI taxonomy Id: 659018
Other names: JCM 16244, KCTC 22451, S. daejeonensis, Stenotrophomonas daejeonensis Lee et al. 2011, Stenotrophomonas sp. MJ03, strain MJ03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.