STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000281085_02132Unannotated protein. (560 aa)    
Predicted Functional Partners:
GCA_000281085_01926
Unannotated protein.
  
  
  0.852
GCA_000281085_04140
Unannotated protein.
  
  
  0.803
GCA_000281085_02120
Unannotated protein.
  
  
  0.800
GCA_000281085_00835
Unannotated protein.
  
     0.752
GCA_000281085_02119
Unannotated protein.
  
     0.749
GCA_000281085_03707
Unannotated protein.
  
  
  0.748
GCA_000281085_02147
Unannotated protein.
  
     0.745
GCA_000281085_03702
Unannotated protein.
  
     0.743
GCA_000281085_02219
Unannotated protein.
  
     0.729
GCA_000281085_00837
Unannotated protein.
  
     0.727
Your Current Organism:
Catenovulum agarivorans YM01
NCBI taxonomy Id: 659495
Other names: C. agarivorans YM01, Catenovulum agarivorans str. YM01, Catenovulum agarivorans strain YM01, bacterium YM01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.