Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFK05966.1Hypothetical protein. (601 aa)    
Predicted Functional Partners:
AFK05967.1
PFAM: Cytochrome C biogenesis protein transmembrane region.
       0.773
AFK06173.1
PFAM: Fibronectin type III domain.
  
     0.511
AFK05927.1
Hypothetical protein.
 
  
 0.504
AFK05914.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
     0.500
AFK07124.1
Isoform II.
  
     0.479
AFK07045.1
Putative protein-S-isoprenylcysteine methyltransferase; PFAM: Acyltransferase.
  
     0.474
AFK05985.1
Hypothetical protein.
  
     0.461
AFK07379.1
Glycogen debranching enzyme.
  
     0.451
AFK06064.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase.
 
     0.444
AFK07308.1
Glycogen debranching enzyme.
  
     0.443
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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