Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFK06071.1PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein. (453 aa)    
Predicted Functional Partners:
AFK06154.1
PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA.
 
  
 0.722
AFK07221.1
Putative amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
 
  
 0.718
AFK07562.1
Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.
 
  
 0.607
AFK06069.1
Alcohol dehydrogenase, class IV; PFAM: Iron-containing alcohol dehydrogenase.
       0.567
AFK06070.1
Hypothetical protein; PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB.
       0.553
AFK06068.1
Putative SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase.
       0.552
AFK06304.1
Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
  
  
 0.522
AFK07895.1
PAS domain S-box; PFAM: EAL domain; GGDEF domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
  
    0.518
AFK06567.1
Putative domain HDIG-containing protein; PFAM: HD domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG.
  
    0.502
AFK06430.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.481
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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