Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFK06093.1 | AFK06095.1 | Theba_0364 | Theba_0366 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | Hypothetical protein. | 0.525 |
AFK06093.1 | AFK06096.1 | Theba_0364 | Theba_0367 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | Hypothetical protein. | 0.534 |
AFK06093.1 | AFK06098.1 | Theba_0364 | Theba_0369 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.586 |
AFK06093.1 | AFK06099.1 | Theba_0364 | Theba_0370 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.534 |
AFK06093.1 | recA | Theba_0364 | Theba_0371 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.560 |
AFK06093.1 | recX | Theba_0364 | Theba_0372 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | Hypothetical protein; Modulates RecA activity; Belongs to the RecX family. | 0.548 |
AFK06093.1 | rimO | Theba_0364 | Theba_0368 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.556 |
AFK06093.1 | rny | Theba_0364 | Theba_0373 | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | Hypothetical protein; Endoribonuclease that initiates mRNA decay. | 0.423 |
AFK06095.1 | AFK06093.1 | Theba_0366 | Theba_0364 | Hypothetical protein. | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | 0.525 |
AFK06095.1 | AFK06096.1 | Theba_0366 | Theba_0367 | Hypothetical protein. | Hypothetical protein. | 0.773 |
AFK06095.1 | AFK06098.1 | Theba_0366 | Theba_0369 | Hypothetical protein. | PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.773 |
AFK06095.1 | AFK06099.1 | Theba_0366 | Theba_0370 | Hypothetical protein. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.773 |
AFK06095.1 | recA | Theba_0366 | Theba_0371 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.773 |
AFK06095.1 | recX | Theba_0366 | Theba_0372 | Hypothetical protein. | Hypothetical protein; Modulates RecA activity; Belongs to the RecX family. | 0.773 |
AFK06095.1 | rimO | Theba_0366 | Theba_0368 | Hypothetical protein. | Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. | 0.773 |
AFK06095.1 | rny | Theba_0366 | Theba_0373 | Hypothetical protein. | Hypothetical protein; Endoribonuclease that initiates mRNA decay. | 0.603 |
AFK06096.1 | AFK06093.1 | Theba_0367 | Theba_0364 | Hypothetical protein. | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; Belongs to the uridine kinase family. | 0.534 |
AFK06096.1 | AFK06095.1 | Theba_0367 | Theba_0366 | Hypothetical protein. | Hypothetical protein. | 0.773 |
AFK06096.1 | AFK06098.1 | Theba_0367 | Theba_0369 | Hypothetical protein. | PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.795 |
AFK06096.1 | AFK06099.1 | Theba_0367 | Theba_0370 | Hypothetical protein. | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. | 0.827 |
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