Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFK06680.1Hypothetical protein. (523 aa)    
Predicted Functional Partners:
AFK06681.1
Hypothetical protein.
       0.732
AFK06679.1
Hypothetical protein.
       0.525
AFK08314.1
Periplasmic protease; PFAM: Peptidase family S41.
 
   0.451
AFK08142.1
Hypothetical protein.
  
 
 0.442
AFK07719.1
Subtilisin-like serine protease; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); Subtilase family; Belongs to the peptidase S8 family.
 
 
 0.425
AFK07758.1
Subtilisin-like serine protease; PFAM: Subtilase family.
 
 
 0.416
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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