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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK06729.1Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family. (341 aa)    
Predicted Functional Partners:
AFK06728.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
   0.932
AFK07881.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
 
 
 0.837
AFK07730.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
 
 0.823
AFK08184.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
   0.803
AFK07715.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
   0.797
AFK07732.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
   0.793
AFK07717.1
ABC-type sugar transport system, periplasmic component; PFAM: family.
 
 0.791
AFK06730.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
  
    0.785
AFK07723.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
   0.779
AFK08042.1
ABC-type sugar transport system, ATPase component; PFAM: ABC transporter.
   0.778
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.