STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK07111.1PFAM: Bacterial regulatory proteins, lacI family; family. (355 aa)    
Predicted Functional Partners:
AFK07110.1
Sugar phosphate permease; PFAM: Major Facilitator Superfamily.
  
  
 0.782
AFK07867.1
PFAM: Bacterial regulatory proteins, gntR family; family; manually curated; non-canonical start codon.
  
     0.698
AFK07112.1
PFAM: NHL repeat; Redoxin.
       0.426
AFK07109.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor.
       0.419
AFK07108.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctB family.
   
   0.409
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.