Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFK07610.1Hypothetical protein. (195 aa)    
Predicted Functional Partners:
AFK07611.1
Hypothetical protein.
 
     0.902
AFK07613.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
 
     0.885
AFK07620.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.801
AFK07622.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
 
     0.801
AFK06215.1
TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: Citrate transporter.
 
     0.782
AFK06217.1
Putative deacylase; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
  
     0.774
AFK07255.1
TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: DctM-like transporters.
  
     0.774
AFK08259.1
Hypothetical protein.
  
     0.774
AFK07614.1
Dipeptidase; PFAM: Peptidase family C69.
 
     0.755
AFK08257.1
Hypothetical protein; TIGRFAM: poly-gamma-glutamate biosynthesis protein PgsC/CapC.
  
     0.746
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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