STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK07642.1Transcriptional regulator; PFAM: Helix-turn-helix domain, rpiR family; SIS domain. (273 aa)    
Predicted Functional Partners:
AFK07641.1
PFAM: Glycosyl transferase family 2.
     
 0.798
AFK07639.1
Permease component of ABC-type sugar transporter; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.768
AFK07640.1
ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.765
AFK07638.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
 
     0.651
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.572
AFK07496.1
Transcriptional regulator; PFAM: Helix-turn-helix domain, rpiR family; SIS domain.
  
     0.556
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.