Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFK07798.1Dipeptidase; PFAM: Peptidase family C69. (430 aa)    
Predicted Functional Partners:
AFK07796.1
PFAM: Glycerophosphoryl diester phosphodiesterase family.
 
     0.789
AFK07797.1
Hypothetical protein; PFAM: DUF218 domain.
       0.760
AFK06173.1
PFAM: Fibronectin type III domain.
  
     0.641
AFK08236.1
Secreted/surface protein with fasciclin-like repeats; PFAM: Fasciclin domain.
  
     0.615
AFK07795.1
Hypothetical protein.
       0.508
AFK07211.1
Putative sterol carrier protein; PFAM: SCP-2 sterol transfer family.
  
     0.495
AFK08118.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; manually curated.
  
 
   0.461
AFK07963.1
Ankyrin repeat-containing protein.
  
 
   0.421
AFK06700.1
PFAM: beta-N-acetylglucosaminidase.
  
     0.415
AFK06243.1
TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein.
  
     0.409
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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