Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFK07901.1Penicillin-binding protein, beta-lactamase class C; PFAM: Beta-lactamase. (561 aa)    
Predicted Functional Partners:
AFK07155.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase family.
 
     0.492
AFK08209.1
PFAM: Protein of unknown function (DUF1343).
 
    0.439
AFK08046.1
PFAM: Protein of unknown function (DUF1343).
 
    0.434
AFK07711.1
Xaa-Pro aminopeptidase; PFAM: Metallopeptidase family M24.
  
     0.412
AFK08252.1
Putative homoserine kinase type II (protein kinase fold); PFAM: Phosphotransferase enzyme family.
 
     0.405
AFK08106.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase; PFAM: Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat.
 
     0.402
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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