STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK08117.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
AFK08119.1
Phytoene dehydrogenase-like oxidoreductase; PFAM: FAD binding domain.
 
   
 0.945
AFK08118.1
Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; manually curated.
 
  
 0.941
AFK07999.1
Flavodoxin.
 
     0.691
AFK07679.1
Hypothetical protein.
 
     0.591
AFK07896.1
Diguanylate cyclase; PFAM: HAMP domain; HD domain; Cache domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain.
 
    0.519
AFK07907.1
Diguanylate cyclase; PFAM: HD domain; HAMP domain; Cache domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain.
  
    0.512
AFK08093.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
    0.506
def-2
N-formylmethionyl-tRNA deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
    0.504
AFK08120.1
ADP-ribose pyrophosphatase; PFAM: NUDIX domain.
       0.501
AFK08143.1
Phytoene dehydrogenase-like oxidoreductase; PFAM: FAD binding domain.
 
   
 0.494
Your Current Organism:
Mesotoga prima
NCBI taxonomy Id: 660470
Other names: M. prima MesG1.Ag.4.2, Mesotoga prima MesG1.Ag.4.2, Thermotogales bacterium MesG1.Ag.4.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.