STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX66012.1Type I restriction enzyme, R subunit. (994 aa)    
Predicted Functional Partners:
SDX65996.1
Type I restriction enzyme, S subunit.
 
  
 0.997
SDX65977.1
Type I restriction enzyme M protein.
 
 
 0.993
SDY56745.1
Hypothetical protein.
  
 
 0.990
SDX65418.1
N-6 DNA Methylase.
 
 
 0.877
SDY07223.1
Hypothetical protein.
  
 
 0.859
SDY32043.1
N-6 DNA Methylase.
  
 
 0.859
SDY44968.1
Predicted transcriptional regulator.
   
    0.638
SDX65948.1
TATA binding protein of transcription factor TFIID.
       0.550
SDX87266.1
Superfamily II DNA or RNA helicase.
  
  
 0.496
rad25
DNA excision repair protein ERCC-3.
  
  
 0.496
Your Current Organism:
Halobellus clavatus
NCBI taxonomy Id: 660517
Other names: CGMCC 1.10118, H. clavatus, Halobacteriaceae archaeon TBN12, Halobacteriaceae archaeon TNN18, Halobellus clavatus Cui et al. 2011, JCM 16424, strain TNN18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.