STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY23490.1Predicted DNA binding protein, contains HTH domain. (224 aa)    
Predicted Functional Partners:
SDY24439.1
HTH DNA binding domain-containing protein.
  
     0.670
SDX92893.1
Hypothetical protein.
  
     0.644
SDY02853.1
Hypothetical protein.
  
     0.614
SDY00763.1
V/A-type H+-transporting ATPase subunit K.
  
     0.589
SDX77144.1
Hypothetical protein; Belongs to the UPF0201 family.
  
     0.577
SDX73346.1
Predicted transcriptional regulator.
  
     0.569
SDX93671.1
Predicted transcriptional regulator.
  
     0.569
SDX73077.1
DNA topoisomerase-1.
  
     0.527
SDX66518.1
Hypothetical protein.
  
     0.510
SDY23470.1
NADPH:quinone reductase.
       0.501
Your Current Organism:
Halobellus clavatus
NCBI taxonomy Id: 660517
Other names: CGMCC 1.10118, H. clavatus, Halobacteriaceae archaeon TBN12, Halobacteriaceae archaeon TNN18, Halobellus clavatus Cui et al. 2011, JCM 16424, strain TNN18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.