STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY36488.1ABC-2 type transport system ATP-binding protein. (318 aa)    
Predicted Functional Partners:
SDY36512.1
ABC-2 type transport system permease protein.
 
 0.975
SDX77294.1
ABC-2 type transport system permease protein.
 
 0.841
SDX63648.1
ABC-2 type transport system permease protein.
 
 
 0.718
SDY29746.1
ABC-2 type transport system permease protein.
 
 
 0.552
SDX91703.1
Putative efflux protein, MATE family.
  
  
 0.539
SDY22955.1
Putative efflux protein, MATE family.
  
  
 0.539
SDY48972.1
Putative efflux protein, MATE family.
  
  
 0.539
SDY36471.1
Protein of unknown function.
       0.538
SDY42369.1
ATP-binding cassette, subfamily B, MsbA.
  
0.508
SDY36525.1
Protease-4.
  
    0.494
Your Current Organism:
Halobellus clavatus
NCBI taxonomy Id: 660517
Other names: CGMCC 1.10118, H. clavatus, Halobacteriaceae archaeon TBN12, Halobacteriaceae archaeon TNN18, Halobellus clavatus Cui et al. 2011, JCM 16424, strain TNN18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.