STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE80502.1Zn-dependent protease (includes SpoIVFB). (200 aa)    
Predicted Functional Partners:
SDE80528.1
Pheromone shutdown-related protein TraB.
       0.810
SDE80473.1
Hypothetical protein.
       0.594
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
       0.567
SDE80553.1
Acyl-CoA hydrolase.
       0.558
SDF86903.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
  
   
 0.442
SDF74265.1
Stage V sporulation protein R.
  
  
 0.432
SDF82213.1
methylmalonyl-CoA mutase.
       0.431
SDG34239.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
       0.426
SDE80580.1
Hypothetical protein.
       0.419
SDF55613.1
TatD-related deoxyribonuclease.
  
     0.412
Your Current Organism:
Halorientalis regularis
NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.