STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF02382.1HalX domain-containing protein. (196 aa)    
Predicted Functional Partners:
SDF29594.1
PAS domain S-box-containing protein.
 
 
 0.874
SDF86981.1
PAS domain S-box-containing protein.
 
 
 0.860
SDF73398.1
PAS domain S-box-containing protein.
 
 
 0.815
SDE93270.1
PAS domain S-box-containing protein.
  
 
 0.782
SDF60207.1
Signal transduction histidine kinase.
  
 
 0.782
SDE76191.1
PAS domain S-box-containing protein.
  
  
  0.763
SDG07201.1
PAS domain S-box-containing protein.
  
  
  0.756
cheB
Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.749
SDF63035.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.747
SDF09478.1
PAS domain S-box-containing protein.
  
 
  0.709
Your Current Organism:
Halorientalis regularis
NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28
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