STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE99340.1N-acetylneuraminate synthase. (360 aa)    
Predicted Functional Partners:
SDE99370.1
CMP-N-acetylneuraminic acid synthetase.
 
 0.995
SDF42344.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
 0.841
SDE99314.1
Hypothetical protein.
       0.773
SDF03785.1
Glucokinase.
     
 0.764
SDE99400.1
Hypothetical protein.
 
  
 0.631
SDF35464.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
  
  0.619
SDF03356.1
2-keto-3-deoxy-phosphogluconate aldolase.
    
 0.591
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.591
SDE78142.1
Cysteine-rich secretory protein family protein.
     
 0.589
SDG38730.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
     
 0.589
Your Current Organism:
Halorientalis regularis
NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28
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