STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF55936.1Putative transcriptional regulator. (235 aa)    
Predicted Functional Partners:
SDF71147.1
3-hydroxy-3-methylglutaryl CoA synthase.
 
    0.774
SDE72617.1
3-hydroxy-3-methylglutaryl CoA synthase.
 
    0.771
SDF66513.1
hydroxymethylglutaryl-CoA synthase.
 
    0.762
SDE90318.1
Putative membrane protein.
 
     0.712
SDF14204.1
Putative membrane protein.
 
     0.705
carS
CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.695
SDE90361.1
Hypothetical protein.
  
     0.690
SDF55809.1
hydroxymethylglutaryl-CoA synthase.
  
    0.689
SDF71124.1
Uncharacterized OB-fold protein, contains Zn-ribbon domain.
 
    0.658
SDF00753.1
tRNA-archaeosine synthase.
  
     0.646
Your Current Organism:
Halorientalis regularis
NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28
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