STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF78085.1ATP dependent helicase, Lhr family. (941 aa)    
Predicted Functional Partners:
SDF78066.1
Putative phosphoesterase.
 
    0.837
SDF78011.1
Replication factor A1.
 
     0.729
SDF78039.1
Hypothetical protein.
 
     0.704
SDF78115.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
       0.671
SDF55936.1
Putative transcriptional regulator.
  
     0.583
SDE90318.1
Putative membrane protein.
  
     0.575
SDF14204.1
Putative membrane protein.
  
     0.549
SDG28162.1
Putative mRNA 3-end processing factor.
 
    0.531
SDG31187.1
Putative mRNA 3-end processing factor.
 
    0.522
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
    0.515
Your Current Organism:
Halorientalis regularis
NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.