STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG39782.1Hypothetical protein. (256 aa)    
Predicted Functional Partners:
SDF74818.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.724
SDG39807.1
Porphobilinogen synthase; Belongs to the ALAD family.
       0.628
SDF33997.1
Hypothetical protein.
   
    0.605
SDG39910.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.568
SDG39840.1
Protein of unknown function.
       0.461
SDG39869.1
Hypothetical protein.
       0.461
SDG39938.1
Hypothetical protein.
       0.461
SDG39753.1
Fe-S oxidoreductase.
       0.438
SDE77909.1
ABC-2 type transport system permease protein.
   
  
 0.432
SDF29018.1
ABC-2 type transport system permease protein.
   
  
 0.432
Your Current Organism:
Halorientalis regularis
NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.