STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM14778.1Archaeosortase A, PGF-CTERM-specific. (317 aa)    
Predicted Functional Partners:
SDM78079.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase.
  
   
 0.736
SDL97195.1
Signal peptidase, endoplasmic reticulum-type.
  
   
 0.733
SDM38215.1
Uncharacterized membrane protein.
  
     0.733
SDL90528.1
Signal peptidase, endoplasmic reticulum-type.
  
   
 0.725
SDM47194.1
Uncharacterized membrane protein, DUF106 family.
  
     0.723
SDL99051.1
Hypothetical protein.
  
     0.718
SDL96523.1
Replication factor A1.
  
     0.717
SDM81040.1
Predicted acyltransferase, contains DUF342 domain.
  
     0.717
secE
Protein transport protein SEC61 subunit gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.715
SDM94340.1
Flagellin N-terminal-like domain-containing protein.
  
     0.715
Your Current Organism:
Halogranum gelatinilyticum
NCBI taxonomy Id: 660521
Other names: CGMCC 1.10119, H. gelatinilyticum, Halobacteriaceae archaeon TNN44, Halogranum gelatinilyticum Cui et al. 2011, JCM 16426, strain TNN44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.