STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM18648.1Plastocyanin. (138 aa)    
Predicted Functional Partners:
SDM18674.1
CDP-diacylglycerol---serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.670
SDM91292.1
Halocyanin domain-containing protein.
  
     0.587
SDM15290.1
Tat (twin-arginine translocation) pathway signal sequence.
 
 
  0.571
SDM94680.1
Multicopper oxidase.
 
 
  0.570
SDM76848.1
Ferredoxin.
  
 
   0.530
SDM46453.1
Protein of unknown function.
  
     0.525
SDL98200.1
Glutathione S-transferase, N-terminal domain.
  
     0.518
SDM08119.1
Halocyanin domain-containing protein.
  
     0.505
SDN03052.1
Ferredoxin [2Fe-2S].
  
 
   0.497
SDL88397.1
Ferredoxin [2Fe-2S].
  
 
   0.487
Your Current Organism:
Halogranum gelatinilyticum
NCBI taxonomy Id: 660521
Other names: CGMCC 1.10119, H. gelatinilyticum, Halobacteriaceae archaeon TNN44, Halogranum gelatinilyticum Cui et al. 2011, JCM 16426, strain TNN44
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