STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM53960.1Pimeloyl-ACP methyl ester carboxylesterase. (294 aa)    
Predicted Functional Partners:
SDL88284.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
   
 0.800
SDL91528.1
Cytochrome P450.
 
 
 0.593
SDM53926.1
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
       0.543
SDM53995.1
Hypothetical protein.
       0.508
SDM22595.1
Uncharacterized peroxidase-related enzyme.
  
  
 0.456
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
  
 
 0.450
SDL90369.1
Phosphoesterase, MJ0936 family.
    
  0.443
SDM57910.1
Serine/threonine protein phosphatase 1.
    
  0.443
SDM93904.1
Phosphoesterase, MJ0936 family.
    
  0.443
SDM53900.1
Hypothetical protein.
       0.429
Your Current Organism:
Halogranum gelatinilyticum
NCBI taxonomy Id: 660521
Other names: CGMCC 1.10119, H. gelatinilyticum, Halobacteriaceae archaeon TNN44, Halogranum gelatinilyticum Cui et al. 2011, JCM 16426, strain TNN44
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