STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM62250.1Uncaracterized surface protein containing fasciclin (FAS1) repeats. (173 aa)    
Predicted Functional Partners:
SDM20431.1
NADH-quinone oxidoreductase subunit C/D.
    
 
 0.999
SDM20486.1
NADH-quinone oxidoreductase subunit I.
    
 
 0.593
SDM20653.1
NADH-quinone oxidoreductase subunit N.
    
 
 0.568
SDM20361.1
NADH-quinone oxidoreductase subunit A.
    
   0.562
SDM20392.1
NADH-quinone oxidoreductase subunit B; Belongs to the complex I 20 kDa subunit family.
    
   0.562
SDM20461.1
NADH dehydrogenase subunit H.
    
   0.562
SDM20514.1
NADH dehydrogenase subunit J.
    
   0.562
SDM20573.1
NADH-quinone oxidoreductase subunit K.
    
   0.562
SDM62270.1
PAS domain S-box-containing protein.
 
     0.557
SDM20624.1
NADH dehydrogenase subunit M.
    
 
 0.552
Your Current Organism:
Halogranum gelatinilyticum
NCBI taxonomy Id: 660521
Other names: CGMCC 1.10119, H. gelatinilyticum, Halobacteriaceae archaeon TNN44, Halogranum gelatinilyticum Cui et al. 2011, JCM 16426, strain TNN44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.