STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN22668.1Sugar-specific transcriptional regulator TrmB. (358 aa)    
Predicted Functional Partners:
SDM49714.1
Sugar-specific transcriptional regulator TrmB.
  
     0.687
SDM70636.1
Hypothetical protein.
  
     0.561
SDM05872.1
Hypothetical protein.
  
     0.529
SDM02318.1
Hypothetical protein.
  
     0.442
SDM10746.1
Hypothetical protein.
  
     0.425
SDN22695.1
Hypothetical protein.
       0.422
SDN22725.1
Hypothetical protein.
       0.422
SDM44141.1
Major Facilitator Superfamily protein.
  
     0.419
SDM85440.1
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.416
SDN02004.1
Helix-turn-helix domain-containing protein.
  
     0.415
Your Current Organism:
Halogranum gelatinilyticum
NCBI taxonomy Id: 660521
Other names: CGMCC 1.10119, H. gelatinilyticum, Halobacteriaceae archaeon TNN44, Halogranum gelatinilyticum Cui et al. 2011, JCM 16426, strain TNN44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.