Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DSJ_00085LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
DSJ_03520
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
DSJ_00125
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
DSJ_13390
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
DSJ_20180
Cytochrome-c peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
DSJ_04305
ABC transporter ATP-binding protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
DSJ_07760
ABC transporter substrate-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
DSJ_00120
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
gntR
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.730
fruR
DNA-binding transcriptional regulator FruR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
DSJ_00075
6-phospho-beta-glucosidase; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
    0.633
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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