Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DSJ_00375 | rplQ | DSJ_00375 | DSJ_00385 | Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
| DSJ_00375 | rpsD | DSJ_00375 | DSJ_00395 | Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.893 |
| DSJ_00375 | yhdN | DSJ_00375 | DSJ_00380 | Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.576 |
| rplQ | DSJ_00375 | DSJ_00385 | DSJ_00375 | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
| rplQ | rpoA | DSJ_00385 | DSJ_00390 | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.993 |
| rplQ | rpsD | DSJ_00385 | DSJ_00395 | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
| rplQ | yhdN | DSJ_00385 | DSJ_00380 | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.537 |
| rpoA | rplQ | DSJ_00390 | DSJ_00385 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.993 |
| rpoA | rpsD | DSJ_00390 | DSJ_00395 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
| rpoA | yhdN | DSJ_00390 | DSJ_00380 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.462 |
| rpsD | DSJ_00375 | DSJ_00395 | DSJ_00375 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.893 |
| rpsD | rplQ | DSJ_00395 | DSJ_00385 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.998 |
| rpsD | rpoA | DSJ_00395 | DSJ_00390 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rpsD | yhdN | DSJ_00395 | DSJ_00380 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.457 |
| yhdN | DSJ_00375 | DSJ_00380 | DSJ_00375 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Alternative ribosome-rescue factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.576 |
| yhdN | rplQ | DSJ_00380 | DSJ_00385 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.537 |
| yhdN | rpoA | DSJ_00380 | DSJ_00390 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.462 |
| yhdN | rpsD | DSJ_00380 | DSJ_00395 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.457 |