Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ficCell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)    
Predicted Functional Partners:
yeaG
PrkA family serine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.514
ppiA
Peptidylprolyl isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.493
DSJ_22375
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.493
DSJ_00880
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
DSJ_00885
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
uspB
ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.466
DSJ_00875
IS66 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
DSJ_15450
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.447
DSJ_03670
VOC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.440
DSJ_19835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.435
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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