Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
DSJ_00975Pilus assembly protein HofM; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
DSJ_00970
Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
  
     0.704
DSJ_00035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
DSJ_18390
RpoE-regulated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
DSJ_08980
Suppressor of fused protein (SUFU); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
DSJ_09780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0319 family.
  
     0.663
mzrA
Modulator protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.662
DSJ_01045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
DSJ_03210
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
DSJ_11245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.648
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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